MSI to MATLAB conversion does not have to be a pain, it could be fun :)
First, one would create pdf object:

>>pdf = pdf4D(<filename>);

where <filename> is full path to the pdf (processed data file).

To get pdf header information all you have to do is

>>hdr = get(pdf, 'header');

or simply
>>hdr = pdf.header;

Since pdf object will also read config and hs_file from the same directory, you could get information from those file in similar way by using get or subsref methods.

Some methods of the pdf object:

And here is the link to the zip file:

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